Born Free
The Disease Model
Protocol
Getting started
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1
Overview
1.1
Summary
1.2
Disclaimer
1.3
Contents
1.4
Introduction
2
The Protocol
↳ Severe neuropsych onboarding
↳ Getting started
2.1
Collect your data
2.1.1
Blood tests
2.1.2
Intracellular minerals
2.1.3
Mosaic DX Organic Acids Test (OAT)
2.1.4
Cronometer
2.1.5
Microbiome testing
↳ Fermenting species identification
2.2
Lifestyle changes
2.2.1
Diet
↳ Feeding energy pathways
↳ Standard mixed diets vs ketogenic diets
↳ Active Vitamin A deficiency
↳ Vitamin Q deficiency
↳ Strategic eating
2.2.2
Lymphatic maintenance
2.2.3
Living without chronic dysbiosis
↳ Nasopharnyx
↳ Gastrointestinal biofilms and pathogens
↳ Mammary glands, lactiferous ducts
↳ Parasites
↳ Glycocalyx
↳ Interventions
↳ Binders
↳ Bacteriophages
↳ DIY antiseptic recipe
↳ Biofilm breakers
↳ Protective probiotics
↳ Prebiotics
↳ Herbal anti-microbials
↳ Prescription anti-microbials
↳ Environment
2.2.4
The importance of “pacing”
↳ Acidaemia: a key influence in disease progression
↳ NADPH: a reductive "currency", powered by TCA cycle flux
2.2.5
Structural issues
2.2.6
Cortisol, limbic system, glycogen and IFN-γ
↳ Histamine triggers glycogen redistribution
↳ Sympathetic overdrive
↳ Anxiety, isolation, and phobia
2.2.7
Reproductive health, menstrual cycles, UTIs and PSSD
2.2.8
Sleep
2.2.9
PEM prevention and recovery
2.3
Daily schedule
↳ 2.3A Alternative – [no compounded nutrients]
↳ 2.3B Alternative – [no DIY shake]
↳ 2.3C Alternative – [no DIY shake or compounded nutrients]
↳ 2.3D Starter Schedule [compounded nutrients]
↳ 2.3E Starter Schedule [without compounded nutrients]
2.3.1
Herxheimer / die-off / acetaldehyde support
↳ Methylene Blue - "A lifeguard for the NAD+ pool"
2.3.2
Remineralisation
2.3.3
Blood-flow, hypoxia and fibrin-amyloid
2.3.4
Rapid withdrawal, hypo/hypermetabolism
2.4
Optional follow-up
2.5
Ongoing preventative maintenance
3
Rationale for protocol inclusions and general notes
4
Calculating supplement doses
4.1
Electrolytes
4.2
Compounded nutrients
4.3
DIY powder
5
Ordering supplements
5.1
Bacteriophage lookup
6
FAQ
7
Changelog
The Disease Model
Protocol
Getting started
NotebookLM AI Assistance
Single Page View (for printing / PDF)
Tools
Meal Planner
Find an Oligoscan Practitioner
Oligoscan PDF Processor
MosaicDX OAT Interpreter
Biomesight Analysis
Theriome Aristotle Interpreter
Antimicrobial Library
Videos
Last Updated 4 Feb 2026
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