Born Free
The Disease Model
Protocol
Getting started NotebookLM AI Assistance Single Page View (for printing / PDF)
Tools
Meal Planner Electrolyte Calculator Find an Oligoscan Practitioner Oligoscan PDF Processor MosaicDX OAT Interpreter Biomesight Analysis Theriome Aristotle Interpreter Antimicrobial Library
Videos
Theme
1 Overview
1.1 Summary
1.2 Disclaimer
1.3 Contents
1.4 Introduction
2 The protocol
↳ Severe neuropsych onboarding
↳ Getting started
2.1 Collect your data
2.1.1 Blood tests
2.1.2 Intracellular minerals
2.1.3 Mosaic DX Organic Acids Test (OAT)
2.1.4 Cronometer
2.1.5 Microbiome testing
↳ Fermenting species identification
2.2 Lifestyle changes
2.2.1 Diet
↳ Feeding energy pathways
↳ Standard mixed diets vs ketogenic diets
↳ Active Vitamin A deficiency
↳ Vitamin Q deficiency
↳ Strategic eating
2.2.2 Lymphatic maintenance
2.2.3 Living without chronic dysbiosis
↳ Nasopharnyx
↳ Gastrointestinal biofilms and pathogens
↳ Mammary glands, lactiferous ducts
↳ Parasites
↳ Glycocalyx
↳ Interventions
↳ Binders
↳ Bacteriophages
↳ DIY antiseptic recipe
↳ Biofilm breakers
↳ Protective probiotics
↳ Prebiotics
↳ Herbal anti-microbials
↳ Prescription anti-microbials
↳ Environment
2.2.4 The importance of “pacing”
↳ Acidaemia: a key influence in disease progression
↳ NADPH: a reductive "currency", powered by TCA cycle flux
2.2.5 Structural issues
2.2.6 Cortisol, limbic system, glycogen and IFN-γ
↳ Histamine triggers glycogen redistribution
↳ Sympathetic overdrive
↳ Anxiety, isolation, and phobia
2.2.7 Reproductive health, menstrual cycles, UTIs and PSSD
2.2.8 Sleep
2.2.9 PEM prevention and recovery
2.3 Daily schedule
↳ 2.3A Alternative – [no compounded nutrients]
↳ 2.3B Alternative – [no DIY shake]
↳ 2.3C Alternative – [no DIY shake or compounded nutrients]
↳ 2.3D Starter Schedule [compounded nutrients]
↳ 2.3E Starter Schedule [without compounded nutrients]
2.3.1 Herxheimer / die-off / acetaldehyde support
↳ Methylene Blue - "A lifeguard for the NAD+ pool"
2.3.2 Remineralisation
2.3.3 Blood-flow, hypoxia and fibrin-amyloid
2.3.4 Rapid withdrawal, hypo/hypermetabolism
2.4 Optional follow-up
2.5 Ongoing preventative maintenance
3 Rationale for protocol inclusions and general notes
4 Calculating supplement doses
4.1 Electrolytes
4.2 Compounded nutrients
4.3 DIY powder
5 Ordering supplements
5.1 Bacteriophage lookup
6 FAQ
7 Changelog
The Disease Model
Protocol
Getting started NotebookLM AI Assistance Single Page View (for printing / PDF)
Tools
Meal Planner Electrolyte Calculator Find an Oligoscan Practitioner Oligoscan PDF Processor MosaicDX OAT Interpreter Biomesight Analysis Theriome Aristotle Interpreter Antimicrobial Library
Videos
Last Updated 4 Feb 2026

Protocol navigator



START         
START         
Perform microbiome testing for each
tissue / interface
Perform microbiome tes...
Perform blood,
diet, mineral and
OAT tests
Perform blood,...
Perform testing
Perform testing
Assess
lymphatic
system
Assess...
Review
medical history
for inflamed
(mucosal)
tissues
Review...
Order troches
Order troches
Stage 1 -
troches, supplements
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Order supplements
and tools
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Select your
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and
doses
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Stage 2 -
troches, supplements
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Stage 3 - 
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Stage 1
DIY weekly
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Stage 2
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Stage 3
DIY weekly
powder
preparation
Stage 3...
Diet
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Environmental
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Sleep
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De-stress
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Lymphatic
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Mucosal
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antiseptic
bacteriophage
probiotics
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Postural and
physical rehab
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Re-check mineral 
status, ensure
no PEM &
POTS before 
starting Stage 3  
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Antibiotics,
antifungals,
  antiparasitics,
biofilm flush, 
FMT
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IV minerals,
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anticoagulants,
antihistamines
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Clinician accelerated 
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Spirochetes, etc:
      IV CaNa2-EDTA,
Disulfiram + Cu
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